../../tmp/servers/virsirnadb/1174849130
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2184 | 1 | tttccctgacggctgccga | 19 | |
| EF570133.1 | Hepatitis E virus isolate SH-SW-zs1, complete genome | 6607 | ................... | 6625 | 100 |
| AB369690.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E | 6591 | ....at..........t.. | 6609 | 84 |
| AJ272108.1 | Hepatitis E virus (genotype 4) complete genome sequence | 2416 | ..a..........._____ | 2429 | 68 |
| EU375463.1 | Hepatitis E virus isolate Thai-swHEV07, complete genome | 1667 | ____..........a..._ | 1680 | 68 |
| EU375463.1 | Hepatitis E virus isolate Thai-swHEV07, complete genome | 6311 | _...t.g.cg......... | 6328 | 73 |
| D11092.1 | HPECG Hepatitis E virus genomic RNA, complete genome | 821 | ...ta..c.........__ | 837 | 73 |
| L25595.1 | HPEORFS Hepatitis E virus ORFs 1-3 | 820 | ...ta..c.........__ | 836 | 73 |
| L25547.1 | HPEGENA Hepatitis E virus unknown genes | 820 | ...ta..c.........__ | 836 | 73 |
| D11093.1 | HPEUIGH Hepatitis E virus complete genome sequence | 821 | ...ta..c.........__ | 837 | 73 |
| AF444002.1 | Hepatitis E virus clone pSK-HEV-2, complete genome | 819 | ...ta..c.........__ | 835 | 73 |
| AF444003.1 | Hepatitis E virus clone pSK-HEV-3, complete genome | 819 | ...ta..c.........__ | 835 | 73 |
| EU676172.2 | Swine hepatitis E virus isolate swGX40, complete genome | 819 | ..ct...c.........__ | 835 | 73 |
| EU676172.2 | Swine hepatitis E virus isolate swGX40, complete genome | 5510 | ______.........t.._ | 5521 | 57 |
| AB291964.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JYK-Tok03C | 5508 | ___.g..........t.._ | 5522 | 68 |
| AB369687.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E | 1647 | _____.........a..._ | 1659 | 63 |
| AB443623.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 2379 | ..a..........______ | 2391 | 63 |
| AB443624.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 2379 | ..a..........______ | 2391 | 63 |
| AB443625.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 2379 | ..a..........______ | 2391 | 63 |
| AB443626.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 2379 | ..a..........______ | 2391 | 63 |
| AB443627.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 2379 | ..a..........______ | 2391 | 63 |
| AB291952.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIY-T | 2384 | ..a..........______ | 2396 | 63 |
| AB291953.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSO-O | 2384 | ..a..........______ | 2396 | 63 |
| AB291954.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSS-O | 2384 | ..a..........______ | 2396 | 63 |
| AB291955.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSW-K | 2384 | ..a..........______ | 2396 | 63 |
| AB291956.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JYM-T | 2384 | ..a..........______ | 2396 | 63 |
| AB291957.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JYU-O | 2384 | ..a..........______ | 2396 | 63 |
| AB291960.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JTK-Kag06C | 2405 | ..a..........______ | 2417 | 63 |
| FJ763142.1 | Hepatitis E virus isolate KNIH-hHEV4, complete genome | 2414 | _.a..........._____ | 2426 | 63 |
| AY115488.1 | Swine hepatitis E virus strain Arkell, complete genome | 6323 | _...t.g.cg......... | 6340 | 73 |
| EU723516.1 | Swine hepatitis E virus isolate SWP8, complete genome | 6372 | _...t.g.cg......... | 6389 | 73 |
| AB291961.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JMH-Osa04C | 6311 | _...t.g.cg......... | 6328 | 73 |
| EU723512.2 | Swine hepatitis E virus isolate SW626, complete genome | 6310 | _...t.g.cg......... | 6327 | 73 |
| EU723512.2 | Swine hepatitis E virus isolate SW626, complete genome | 4854 | __.........t.gt..._ | 4869 | 68 |
| AB602441.1 | Hepatitis E virus genomic RNA, complete genome, isolate: wbJOY_06 | 6329 | _...t.g.tg......... | 6346 | 73 |
| AB369688.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E | 5407 | ___..gg..t......... | 5392 | 68 |
| EU723513.1 | Swine hepatitis E virus isolate SW627, complete genome | 4829 | __.........t.gt..._ | 4844 | 68 |
| X98292.1 | Hepatitis E virus, complete genome | 825 | _____..c.........__ | 836 | 57 |
| AB091395.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSN-S | 5410 | _______.c.......... | 5399 | 57 |
| AY230202.1 | Hepatitis E virus from Morocco, complete genome | 2900 | _______.c.......... | 2911 | 57 |
| AB097811.1 | Swine hepatitis E virus genomic RNA, complete genome, isolate: swJ13- | 5426 | _______.c.......... | 5415 | 57 |
| AB097812.1 | Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA1 | 5426 | _______.c.......... | 5415 | 57 |
| AB099347.1 | Hepatitis E virus genomic RNA, complete genome, isolate: HE-JK4 | 5426 | _______.c.......... | 5415 | 57 |
| AB189070.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JBOAR1-Hyo04 | 2405 | ..a........._______ | 2416 | 57 |
| AB189070.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JBOAR1-Hyo04 | 5411 | _______.g.......... | 5400 | 57 |
| AB189071.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JDEER | 2388 | ..a........._______ | 2399 | 57 |
| AB189071.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JDEER | 5394 | _______.g.......... | 5383 | 57 |
| AB189072.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 2379 | ..a........._______ | 2390 | 57 |
| AB189072.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 5385 | _______.g.......... | 5374 | 57 |
| AB189073.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 2379 | ..a........._______ | 2390 | 57 |
| AB189073.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 5385 | _______.g.......... | 5374 | 57 |
| AB189074.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 2379 | ..a........._______ | 2390 | 57 |
| AB189074.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 5385 | _______.g.......... | 5374 | 57 |
| AB189075.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 2379 | ..a........._______ | 2390 | 57 |
| AB189075.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 5385 | _______.g.......... | 5374 | 57 |
| AB200239.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JSN-Sap-FH02 | 5427 | _______.c.......... | 5416 | 57 |
| AB193176.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JSF-Tot03C | 5427 | _______.c.......... | 5416 | 57 |
| AB193177.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Sap01C | 5427 | _______.c.......... | 5416 | 57 |
| AB193178.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Nii02L | 5401 | _______.c.......... | 5390 | 57 |
| AB197673.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JKO-ChiSai98 | 5511 | ___.g..........____ | 5522 | 57 |
| AB222184.1 | Hepatitis E virus genomic RNA, complete genome, isolate: wbJYG1 | 2405 | _.a..........______ | 2416 | 57 |
| AB220971.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 5426 | _______.c.......... | 5415 | 57 |
| AB253420.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate:HEVN2 | 5488 | ___.g..........____ | 5499 | 57 |
| EF077630.1 | Hepatitis E virus isolate Ch-S-1, complete genome | 5510 | ___.g..........____ | 5521 | 57 |
| EF206691.1 | Avian hepatitis E virus from USA, complete genome | 1440 | .........t.._______ | 1451 | 57 |
| EU366959.1 | Hepatitis E virus isolate swGX32, complete genome | 5514 | ___.g..........____ | 5525 | 57 |
| AM943646.3 | Avian hepatitis E virus genes for polyprotein, capsid protein and cyt | 1416 | .........t.._______ | 1427 | 57 |
| AB291951.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-S | 2385 | _.a..........______ | 2396 | 57 |
| AB291962.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JHK-Toy04C | 2405 | _.a..........______ | 2416 | 57 |
| AB291963.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JRM-Toy05C | 2405 | _.a..........______ | 2416 | 57 |
| FJ610232.1 | Swine hepatitis E virus isolate swCH189, complete genome | 5514 | ___.g..........____ | 5525 | 57 |
| AB481227.1 | Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-H | 5426 | _______.c.......... | 5415 | 57 |
| FJ527832.2 | Hepatitis E virus isolate SAAS-JDY5, complete genome | 2406 | _.a..........______ | 2417 | 57 |
| GU188851.1 | Swine hepatitis E virus isolate WH09, complete genome | 5426 | _______.g.......... | 5415 | 57 |
| GU361892.1 | Swine hepatitis E virus strain hb-3, complete genome | 2704 | _______..........t. | 2715 | 57 |
| GU119960.2 | Swine hepatitis E virus isolate CHN-XJ-SW33, complete genome | 5510 | ___.g..........____ | 5521 | 57 |
| GU119961.3 | Swine hepatitis E virus isolate CHN-XJ-SW13, complete genome | 5427 | _______.c.......... | 5416 | 57 |
| HQ709170.1 | Hepatitis E virus strain Kernow-C1, complete genome | 5597 | _______.g.......... | 5586 | 57 |
| HQ389543.1 | Hepatitis E virus strain Kernow-C1, complete genome | 5426 | _______.g.......... | 5415 | 57 |
| HQ389544.1 | Hepatitis E virus strain Kernow-C1, complete genome | 5597 | _______.g.......... | 5586 | 57 |
| HQ634346.1 | Hepatitis E virus strain TW6196E, complete genome | 5511 | ___.g..........____ | 5522 | 57 |
| AB080575.1 | Hepatitis E virus genomic RNA, complete genome, isolate: HE-JI4 | 5355 | _________.......... | 5346 | 52 |
| AB108537.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate:CCC220 | 2401 | ____.........._____ | 2410 | 52 |